Genomic evolution and complexity of the Anaphase-promoting Complex (APC) in land plants.
Identifieur interne : 003239 ( Main/Exploration ); précédent : 003238; suivant : 003240Genomic evolution and complexity of the Anaphase-promoting Complex (APC) in land plants.
Auteurs : Marcelo De F. Lima [Brésil] ; Núbia B. Eloy ; Camila Pegoraro ; Rauan Sagit ; Cristian Rojas ; Thiago Bretz ; Lívia Vargas ; Arne Elofsson ; Antonio Costa De Oliveira ; Adriana S. Hemerly ; Paulo Cg FerreiraSource :
- BMC plant biology [ 1471-2229 ] ; 2010.
Descripteurs français
- KwdFr :
- Arabidopsis (génétique), Cartographie chromosomique (MeSH), Chlorophyta (enzymologie), Chlorophyta (génétique), Chromosomes de plante (génétique), Complexe promoteur de l'anaphase (MeSH), Données de séquences moléculaires (MeSH), Génome végétal (génétique), Oryza (génétique), Phylogenèse (MeSH), Plantes (enzymologie), Plantes (génétique), Populus (génétique), Protéines végétales (classification), Protéines végétales (génétique), RT-PCR (MeSH), Rhodophyta (enzymologie), Rhodophyta (génétique), Régulation de l'expression des gènes végétaux (MeSH), Sous-unités de protéines (classification), Sous-unités de protéines (génétique), Spécificité d'espèce (MeSH), Synténie (MeSH), Séquence d'acides aminés (MeSH), Séquence nucléotidique (MeSH), Ubiquitin-protein ligase complexes (classification), Ubiquitin-protein ligase complexes (génétique), Variation génétique (MeSH), Évolution moléculaire (MeSH).
- MESH :
- classification : Protéines végétales, Sous-unités de protéines, Ubiquitin-protein ligase complexes.
- enzymologie : Chlorophyta, Plantes, Rhodophyta.
- génétique : Arabidopsis, Chlorophyta, Chromosomes de plante, Génome végétal, Oryza, Plantes, Populus, Protéines végétales, Rhodophyta, Sous-unités de protéines, Ubiquitin-protein ligase complexes.
- Cartographie chromosomique, Complexe promoteur de l'anaphase, Données de séquences moléculaires, Phylogenèse, RT-PCR, Régulation de l'expression des gènes végétaux, Spécificité d'espèce, Synténie, Séquence d'acides aminés, Séquence nucléotidique, Variation génétique, Évolution moléculaire.
English descriptors
- KwdEn :
- Amino Acid Sequence (MeSH), Anaphase-Promoting Complex-Cyclosome (MeSH), Arabidopsis (genetics), Base Sequence (MeSH), Chlorophyta (enzymology), Chlorophyta (genetics), Chromosome Mapping (MeSH), Chromosomes, Plant (genetics), Evolution, Molecular (MeSH), Gene Expression Regulation, Plant (MeSH), Genetic Variation (MeSH), Genome, Plant (genetics), Molecular Sequence Data (MeSH), Oryza (genetics), Phylogeny (MeSH), Plant Proteins (classification), Plant Proteins (genetics), Plants (enzymology), Plants (genetics), Populus (genetics), Protein Subunits (classification), Protein Subunits (genetics), Reverse Transcriptase Polymerase Chain Reaction (MeSH), Rhodophyta (enzymology), Rhodophyta (genetics), Species Specificity (MeSH), Synteny (MeSH), Ubiquitin-Protein Ligase Complexes (classification), Ubiquitin-Protein Ligase Complexes (genetics).
- MESH :
- chemical , classification : Plant Proteins, Protein Subunits, Ubiquitin-Protein Ligase Complexes.
- chemical , genetics : Plant Proteins, Protein Subunits, Ubiquitin-Protein Ligase Complexes.
- chemical : Anaphase-Promoting Complex-Cyclosome.
- enzymology : Chlorophyta, Plants, Rhodophyta.
- genetics : Arabidopsis, Chlorophyta, Chromosomes, Plant, Genome, Plant, Oryza, Plants, Populus, Rhodophyta.
- Amino Acid Sequence, Base Sequence, Chromosome Mapping, Evolution, Molecular, Gene Expression Regulation, Plant, Genetic Variation, Molecular Sequence Data, Phylogeny, Reverse Transcriptase Polymerase Chain Reaction, Species Specificity, Synteny.
Abstract
BACKGROUND
The orderly progression through mitosis is regulated by the Anaphase-Promoting Complex (APC), a large multiprotein E3 ubiquitin ligase that targets key cell-cycle regulators for destruction by the 26 S proteasome. The APC is composed of at least 11 subunits and associates with additional regulatory activators during mitosis and interphase cycles. Despite extensive research on APC and activator functions in the cell cycle, only a few components have been functionally characterized in plants.
RESULTS
Here, we describe an in-depth search for APC subunits and activator genes in the Arabidopsis, rice and poplar genomes. Also, searches in other genomes that are not completely sequenced were performed. Phylogenetic analyses indicate that some APC subunits and activator genes have experienced gene duplication events in plants, in contrast to animals. Expression patterns of paralog subunits and activators in rice could indicate that this duplication, rather than complete redundancy, could reflect initial specialization steps. The absence of subunit APC7 from the genome of some green algae species and as well as from early metazoan lineages, could mean that APC7 is not required for APC function in unicellular organisms and it may be a result of duplication of another tetratricopeptide (TPR) subunit. Analyses of TPR evolution suggest that duplications of subunits started from the central domains.
CONCLUSIONS
The increased complexity of the APC gene structure, tied to the diversification of expression paths, suggests that land plants developed sophisticated mechanisms of APC regulation to cope with the sedentary life style and its associated environmental exposures.
DOI: 10.1186/1471-2229-10-254
PubMed: 21087491
PubMed Central: PMC3095333
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
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Lima</name><affiliation wicri:level="1"><nlm:affiliation>Laboratório de Biologia Molecular de Plantas, Instituto de Bioquímica Médica, CCS, Cidade Universitária - Ilha do Fundão, CEP 21941-590 Rio de Janeiro, Brasil. paulof@bioqmed.ufrj.br</nlm:affiliation><country xml:lang="fr">Brésil</country><wicri:regionArea>Laboratório de Biologia Molecular de Plantas, Instituto de Bioquímica Médica, CCS, Cidade Universitária - Ilha do Fundão, CEP 21941-590 Rio de Janeiro</wicri:regionArea><wicri:noRegion>CEP 21941-590 Rio de Janeiro</wicri:noRegion></affiliation></author><author><name sortKey="Eloy, Nubia B" sort="Eloy, Nubia B" uniqKey="Eloy N" first="Núbia B" last="Eloy">Núbia B. Eloy</name></author><author><name sortKey="Pegoraro, Camila" sort="Pegoraro, Camila" uniqKey="Pegoraro C" first="Camila" last="Pegoraro">Camila Pegoraro</name></author><author><name sortKey="Sagit, Rauan" sort="Sagit, Rauan" uniqKey="Sagit R" first="Rauan" last="Sagit">Rauan Sagit</name></author><author><name sortKey="Rojas, Cristian" sort="Rojas, Cristian" uniqKey="Rojas C" first="Cristian" last="Rojas">Cristian Rojas</name></author><author><name sortKey="Bretz, Thiago" sort="Bretz, Thiago" uniqKey="Bretz T" first="Thiago" last="Bretz">Thiago Bretz</name></author><author><name sortKey="Vargas, Livia" sort="Vargas, Livia" uniqKey="Vargas L" first="Lívia" last="Vargas">Lívia Vargas</name></author><author><name sortKey="Elofsson, Arne" sort="Elofsson, Arne" uniqKey="Elofsson A" first="Arne" last="Elofsson">Arne Elofsson</name></author><author><name sortKey="De Oliveira, Antonio Costa" sort="De Oliveira, Antonio Costa" uniqKey="De Oliveira A" first="Antonio Costa" last="De Oliveira">Antonio Costa De Oliveira</name></author><author><name sortKey="Hemerly, Adriana S" sort="Hemerly, Adriana S" uniqKey="Hemerly A" first="Adriana S" last="Hemerly">Adriana S. Hemerly</name></author><author><name sortKey="Ferreira, Paulo Cg" sort="Ferreira, Paulo Cg" uniqKey="Ferreira P" first="Paulo Cg" last="Ferreira">Paulo Cg Ferreira</name></author></analytic><series><title level="j">BMC plant biology</title><idno type="eISSN">1471-2229</idno><imprint><date when="2010" type="published">2010</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Amino Acid Sequence (MeSH)</term><term>Anaphase-Promoting Complex-Cyclosome (MeSH)</term><term>Arabidopsis (genetics)</term><term>Base Sequence (MeSH)</term><term>Chlorophyta (enzymology)</term><term>Chlorophyta (genetics)</term><term>Chromosome Mapping (MeSH)</term><term>Chromosomes, Plant (genetics)</term><term>Evolution, Molecular (MeSH)</term><term>Gene Expression Regulation, Plant (MeSH)</term><term>Genetic Variation (MeSH)</term><term>Genome, Plant (genetics)</term><term>Molecular Sequence Data (MeSH)</term><term>Oryza (genetics)</term><term>Phylogeny (MeSH)</term><term>Plant Proteins (classification)</term><term>Plant Proteins (genetics)</term><term>Plants (enzymology)</term><term>Plants (genetics)</term><term>Populus (genetics)</term><term>Protein Subunits (classification)</term><term>Protein Subunits (genetics)</term><term>Reverse Transcriptase Polymerase Chain Reaction (MeSH)</term><term>Rhodophyta (enzymology)</term><term>Rhodophyta (genetics)</term><term>Species Specificity (MeSH)</term><term>Synteny (MeSH)</term><term>Ubiquitin-Protein Ligase Complexes (classification)</term><term>Ubiquitin-Protein Ligase Complexes (genetics)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Arabidopsis (génétique)</term><term>Cartographie chromosomique (MeSH)</term><term>Chlorophyta (enzymologie)</term><term>Chlorophyta (génétique)</term><term>Chromosomes de plante (génétique)</term><term>Complexe promoteur de l'anaphase (MeSH)</term><term>Données de séquences moléculaires (MeSH)</term><term>Génome végétal (génétique)</term><term>Oryza (génétique)</term><term>Phylogenèse (MeSH)</term><term>Plantes (enzymologie)</term><term>Plantes (génétique)</term><term>Populus (génétique)</term><term>Protéines végétales (classification)</term><term>Protéines végétales (génétique)</term><term>RT-PCR (MeSH)</term><term>Rhodophyta (enzymologie)</term><term>Rhodophyta (génétique)</term><term>Régulation de l'expression des gènes végétaux (MeSH)</term><term>Sous-unités de protéines (classification)</term><term>Sous-unités de protéines (génétique)</term><term>Spécificité d'espèce (MeSH)</term><term>Synténie (MeSH)</term><term>Séquence d'acides aminés (MeSH)</term><term>Séquence nucléotidique (MeSH)</term><term>Ubiquitin-protein ligase complexes (classification)</term><term>Ubiquitin-protein ligase complexes (génétique)</term><term>Variation génétique (MeSH)</term><term>Évolution moléculaire (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="classification" xml:lang="en"><term>Plant Proteins</term><term>Protein Subunits</term><term>Ubiquitin-Protein Ligase Complexes</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>Plant Proteins</term><term>Protein Subunits</term><term>Ubiquitin-Protein Ligase Complexes</term></keywords><keywords scheme="MESH" type="chemical" xml:lang="en"><term>Anaphase-Promoting Complex-Cyclosome</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="fr"><term>Protéines végétales</term><term>Sous-unités de protéines</term><term>Ubiquitin-protein ligase complexes</term></keywords><keywords scheme="MESH" qualifier="enzymologie" xml:lang="fr"><term>Chlorophyta</term><term>Plantes</term><term>Rhodophyta</term></keywords><keywords scheme="MESH" qualifier="enzymology" xml:lang="en"><term>Chlorophyta</term><term>Plants</term><term>Rhodophyta</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Arabidopsis</term><term>Chlorophyta</term><term>Chromosomes, Plant</term><term>Genome, Plant</term><term>Oryza</term><term>Plants</term><term>Populus</term><term>Rhodophyta</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Arabidopsis</term><term>Chlorophyta</term><term>Chromosomes de plante</term><term>Génome végétal</term><term>Oryza</term><term>Plantes</term><term>Populus</term><term>Protéines végétales</term><term>Rhodophyta</term><term>Sous-unités de protéines</term><term>Ubiquitin-protein ligase complexes</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Amino Acid Sequence</term><term>Base Sequence</term><term>Chromosome Mapping</term><term>Evolution, Molecular</term><term>Gene Expression Regulation, Plant</term><term>Genetic Variation</term><term>Molecular Sequence Data</term><term>Phylogeny</term><term>Reverse Transcriptase Polymerase Chain Reaction</term><term>Species Specificity</term><term>Synteny</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Cartographie chromosomique</term><term>Complexe promoteur de l'anaphase</term><term>Données de séquences moléculaires</term><term>Phylogenèse</term><term>RT-PCR</term><term>Régulation de l'expression des gènes végétaux</term><term>Spécificité d'espèce</term><term>Synténie</term><term>Séquence d'acides aminés</term><term>Séquence nucléotidique</term><term>Variation génétique</term><term>Évolution moléculaire</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p><b>BACKGROUND</b></p><p>The orderly progression through mitosis is regulated by the Anaphase-Promoting Complex (APC), a large multiprotein E3 ubiquitin ligase that targets key cell-cycle regulators for destruction by the 26 S proteasome. The APC is composed of at least 11 subunits and associates with additional regulatory activators during mitosis and interphase cycles. Despite extensive research on APC and activator functions in the cell cycle, only a few components have been functionally characterized in plants.</p></div><div type="abstract" xml:lang="en"><p><b>RESULTS</b></p><p>Here, we describe an in-depth search for APC subunits and activator genes in the Arabidopsis, rice and poplar genomes. Also, searches in other genomes that are not completely sequenced were performed. Phylogenetic analyses indicate that some APC subunits and activator genes have experienced gene duplication events in plants, in contrast to animals. Expression patterns of paralog subunits and activators in rice could indicate that this duplication, rather than complete redundancy, could reflect initial specialization steps. The absence of subunit APC7 from the genome of some green algae species and as well as from early metazoan lineages, could mean that APC7 is not required for APC function in unicellular organisms and it may be a result of duplication of another tetratricopeptide (TPR) subunit. Analyses of TPR evolution suggest that duplications of subunits started from the central domains.</p></div><div type="abstract" xml:lang="en"><p><b>CONCLUSIONS</b></p><p>The increased complexity of the APC gene structure, tied to the diversification of expression paths, suggests that land plants developed sophisticated mechanisms of APC regulation to cope with the sedentary life style and its associated environmental exposures.</p></div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">21087491</PMID><DateCompleted><Year>2011</Year><Month>03</Month><Day>18</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Electronic"><Journal><ISSN IssnType="Electronic">1471-2229</ISSN><JournalIssue CitedMedium="Internet"><Volume>10</Volume><PubDate><Year>2010</Year><Month>Nov</Month><Day>18</Day></PubDate></JournalIssue><Title>BMC plant biology</Title><ISOAbbreviation>BMC Plant Biol</ISOAbbreviation></Journal><ArticleTitle>Genomic evolution and complexity of the Anaphase-promoting Complex (APC) in land plants.</ArticleTitle><Pagination><MedlinePgn>254</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1186/1471-2229-10-254</ELocationID><Abstract><AbstractText Label="BACKGROUND" NlmCategory="BACKGROUND">The orderly progression through mitosis is regulated by the Anaphase-Promoting Complex (APC), a large multiprotein E3 ubiquitin ligase that targets key cell-cycle regulators for destruction by the 26 S proteasome. The APC is composed of at least 11 subunits and associates with additional regulatory activators during mitosis and interphase cycles. Despite extensive research on APC and activator functions in the cell cycle, only a few components have been functionally characterized in plants.</AbstractText><AbstractText Label="RESULTS" NlmCategory="RESULTS">Here, we describe an in-depth search for APC subunits and activator genes in the Arabidopsis, rice and poplar genomes. Also, searches in other genomes that are not completely sequenced were performed. Phylogenetic analyses indicate that some APC subunits and activator genes have experienced gene duplication events in plants, in contrast to animals. Expression patterns of paralog subunits and activators in rice could indicate that this duplication, rather than complete redundancy, could reflect initial specialization steps. The absence of subunit APC7 from the genome of some green algae species and as well as from early metazoan lineages, could mean that APC7 is not required for APC function in unicellular organisms and it may be a result of duplication of another tetratricopeptide (TPR) subunit. Analyses of TPR evolution suggest that duplications of subunits started from the central domains.</AbstractText><AbstractText Label="CONCLUSIONS" NlmCategory="CONCLUSIONS">The increased complexity of the APC gene structure, tied to the diversification of expression paths, suggests that land plants developed sophisticated mechanisms of APC regulation to cope with the sedentary life style and its associated environmental exposures.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Lima</LastName><ForeName>Marcelo de F</ForeName><Initials>Mde F</Initials><AffiliationInfo><Affiliation>Laboratório de Biologia Molecular de Plantas, Instituto de Bioquímica Médica, CCS, Cidade Universitária - Ilha do Fundão, CEP 21941-590 Rio de Janeiro, Brasil. paulof@bioqmed.ufrj.br</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Eloy</LastName><ForeName>Núbia B</ForeName><Initials>NB</Initials></Author><Author ValidYN="Y"><LastName>Pegoraro</LastName><ForeName>Camila</ForeName><Initials>C</Initials></Author><Author ValidYN="Y"><LastName>Sagit</LastName><ForeName>Rauan</ForeName><Initials>R</Initials></Author><Author ValidYN="Y"><LastName>Rojas</LastName><ForeName>Cristian</ForeName><Initials>C</Initials></Author><Author ValidYN="Y"><LastName>Bretz</LastName><ForeName>Thiago</ForeName><Initials>T</Initials></Author><Author ValidYN="Y"><LastName>Vargas</LastName><ForeName>Lívia</ForeName><Initials>L</Initials></Author><Author ValidYN="Y"><LastName>Elofsson</LastName><ForeName>Arne</ForeName><Initials>A</Initials></Author><Author ValidYN="Y"><LastName>de Oliveira</LastName><ForeName>Antonio Costa</ForeName><Initials>AC</Initials></Author><Author ValidYN="Y"><LastName>Hemerly</LastName><ForeName>Adriana S</ForeName><Initials>AS</Initials></Author><Author ValidYN="Y"><LastName>Ferreira</LastName><ForeName>Paulo Cg</ForeName><Initials>PC</Initials></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2010</Year><Month>11</Month><Day>18</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>BMC Plant Biol</MedlineTA><NlmUniqueID>100967807</NlmUniqueID><ISSNLinking>1471-2229</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D010940">Plant Proteins</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D021122">Protein Subunits</NameOfSubstance></Chemical><Chemical><RegistryNumber>EC 2.3.2.23</RegistryNumber><NameOfSubstance UI="D043743">Ubiquitin-Protein Ligase Complexes</NameOfSubstance></Chemical><Chemical><RegistryNumber>EC 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MajorTopicYN="N">Chromosome Mapping</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D032461" MajorTopicYN="N">Chromosomes, Plant</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D019143" MajorTopicYN="Y">Evolution, Molecular</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D018506" MajorTopicYN="N">Gene Expression Regulation, Plant</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D014644" MajorTopicYN="N">Genetic Variation</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D018745" MajorTopicYN="N">Genome, Plant</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D008969" MajorTopicYN="N">Molecular Sequence Data</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D012275" MajorTopicYN="N">Oryza</DescriptorName><QualifierName UI="Q000235" 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